PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS188991 to PF01458 (SUFBD)

VIMSS188991 has 475 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-73  230.8   0.0      1e-72  230.5   0.0    1.1  1  VIMSS188991  


Domain annotation for each sequence (and alignments):
>> VIMSS188991  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5   0.0     1e-72     1e-72       2     218 .]     219     444 ..     218     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 230.5 bits;  conditional E-value: 1e-72
        SUFBD   2 qfertlivveegaevtiieey.........agcgvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgeg 90 
                  qfe+tli+++eg+++++ie           ++ g+vei+++k+A++k++++qnws+nv+n+++kra  +++a ve++e+s+g+++t+++ps+ lkg+g
  VIMSS188991 219 QFEHTLIIADEGSYLHFIEGCsapmykgfsFHDGMVEIYAHKDATVKFTTIQNWSRNVINFNNKRAIIEDNAYVEWIEGSIGSRITYTYPSSVLKGPG 316
                  99****************555555555555555*********************************99****************************** PP

        SUFBD  91 aeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAt 188
                  a+++ + v l +g    dtg+k  h +pntss+i+sk+++++++ +++rG++++ kga ++ a ++c++L+l+++++a+t+P+ + ++ ++ + H+At
  VIMSS188991 317 AKTTQYVVSLSNGPYLKDTGAKTWHLAPNTSSKIVSKSISANGGINIYRGLVRIMKGAINSTATVSCDSLILDKESKAYTYPHNQNDEPTASIIHEAT 414
                  ************************************************************************************************** PP

        SUFBD 189 vgkideeqlfYLmsRGlseeeArrlivrgf 218
                  +gk++e++lfYL++RG++eeeA++liv gf
  VIMSS188991 415 TGKLSEDKLFYLKARGIKEEEAKSLIVLGF 444
                  ****************************99 PP



Or compare VIMSS188991 to CDD or PaperBLAST