PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2056881 to PF01458 (SUFBD)

VIMSS2056881 has 495 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-76  242.2   0.2    3.4e-76  241.9   0.2    1.1  1  VIMSS2056881  


Domain annotation for each sequence (and alignments):
>> VIMSS2056881  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.2   3.4e-76   3.4e-76       2     218 .]     234     466 ..     233     466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 3.4e-76
         SUFBD   2 qfertlivveegaevtiieeyagc............gvveivvgknAklkyvevqnw......senvlnlatkra.eegadakvelvevslggkltr 79 
                   qfert++v++e+++v++i   +gc            +vve++++knA++ky++vqnw       +++ln++tkra  eg+++k+++++ ++g+++t+
  VIMSS2056881 234 QFERTILVADEDSYVSYI---EGCsapvrdsyqlhaAVVEVIIHKNAEVKYSTVQNWfpgdnnTGGILNFVTKRAlCEGENSKMSWTQSETGSAITW 327
                   89****************...555555555555555*************************9888**********87799***************** PP

         SUFBD  80 kepsvelkgegaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPelei 176
                   k+ps++l+g+++  e+++v+l++g+q++dtgtk++h g+nt+s+i+skg+++++s++++rG++k+ + a++++++++c+++l++ ++ a+t P++e+
  VIMSS2056881 328 KYPSCILRGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDSMLIGANCGAHTFPYVEC 424
                   ************************************************************************************************* PP

         SUFBD 177 eaddvkcsHgAtvgkideeqlfYLmsRGlseeeArrlivrgf 218
                   +++ ++++H+At+++i e+qlfY+ +RG+see+A ++iv+gf
  VIMSS2056881 425 RNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGF 466
                   *****************************************9 PP



Or compare VIMSS2056881 to CDD or PaperBLAST