PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2092853 to PF01458 (SUFBD)

VIMSS2092853 has 381 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-57  181.1   0.3    1.8e-57  180.6   0.3    1.2  1  VIMSS2092853  


Domain annotation for each sequence (and alignments):
>> VIMSS2092853  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   0.3   1.8e-57   1.8e-57      19     218 .]     148     349 ..     128     349 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 1.8e-57
         SUFBD  19 ieeyagcgvveivvgknAklkyvevqnwsenvlnlatkra..eegadakvelvevslggkltrkepsvelkgegaeaelngvylakgkqhldtgtkv 113
                    e+ a +   +i+v++ Ak+++++  n+ +n+  ++t ++  ++++ a+++ +++  +++l r+++ v+l+ ++++++++g+yl +++  ++t + v
  VIMSS2092853 148 TENSAINLYFDINVAEAAKVNFTNNSNNPNNSKLITTANYliNLDRAAEFNGFNLLNKDALLRNDFVVNLNKPHSRFDVRGLYLINDSAIANTCFLV 244
                   34446667789*****************9999999988888899***************************************************** PP

         SUFBD 114 dhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAtvgkideeqlfYLmsRGlseeeA 210
                   +hn+ +t s+++++gv++++++a f+ k  v+kg ++ +a+q+++n+ ls+ka+++tkPelei+addv c+HgAt+g++d+++lfYL+sRGl+ ++A
  VIMSS2092853 245 NHNASHTYSNVNFRGVANGNAKAWFNAKAIVNKGIEQIQAYQNNKNIQLSNKAEINTKPELEIFADDVVCTHGATIGQLDKDALFYLQSRGLELHDA 341
                   ************************************************************************************************* PP

         SUFBD 211 rrlivrgf 218
                   ++l++++f
  VIMSS2092853 342 QHLLLESF 349
                   ****9988 PP



Or compare VIMSS2092853 to CDD or PaperBLAST