PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS272472 to PF01458 (SUFBD)

VIMSS272472 has 503 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-75  239.2   0.1    2.8e-75  238.8   0.1    1.1  1  VIMSS272472  


Domain annotation for each sequence (and alignments):
>> VIMSS272472  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   0.1   2.8e-75   2.8e-75       2     218 .]     242     474 ..     241     474 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.8 bits;  conditional E-value: 2.8e-75
        SUFBD   2 qfertlivveegaevtiieeyagc............gvveivvgknAklkyvevqnw......senvlnlatkra.eegadakvelvevslggkltrk 80 
                  qfert+++++eg++v++i   +gc            +vve++++knA++ky++vqnw       +++ln++tkra  eg+ +k+++++ ++g+++t+k
  VIMSS272472 242 QFERTILIADEGSYVSYI---EGCsapvrdsyqlhaAVVEVILHKNAEVKYSTVQNWfagsdsTGGILNFVTKRAlCEGEGSKMSWTQSETGSAITWK 336
                  89****************...555555555555555*************************9888**********87799****************** PP

        SUFBD  81 epsvelkgegaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleiea 178
                  +psv+l+g+++  e+ +v+l++g q++dtgtk++h g+nt+s+i++kg+++++s++++rG++k+ +ga +++++++c+++l+++++ a+t P++e+++
  VIMSS272472 337 YPSVILQGDNSVGEFFSVALTNGYQQADTGTKMIHIGKNTKSTIIAKGISAGHSQNTYRGLVKILPGADNARNFTQCDSMLIGPDSGAHTFPYVEVRN 434
                  ************************************************************************************************** PP

        SUFBD 179 ddvkcsHgAtvgkideeqlfYLmsRGlseeeArrlivrgf 218
                  ++++++H+At++ki ++qlfY+ +RG+se++A ++iv+gf
  VIMSS272472 435 NTAQLEHEATTSKIGDDQLFYCLQRGISEDDAISMIVNGF 474
                  ***************************************9 PP



Or compare VIMSS272472 to CDD or PaperBLAST