PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5780670 to PF01458 (SUFBD)

VIMSS5780670 has 475 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-72  228.8   0.0      4e-72  228.6   0.0    1.1  1  VIMSS5780670  


Domain annotation for each sequence (and alignments):
>> VIMSS5780670  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.6   0.0     4e-72     4e-72       2     218 .]     219     444 ..     218     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 228.6 bits;  conditional E-value: 4e-72
         SUFBD   2 qfertlivveegaevtiieey.........agcgvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkge 89 
                   qfe+tl+v++eg+++++ie           ++ g+vei+++k+A++k++++qnws+nv+n+++kra  +++a ve++e+s+g+k+t+++ps+ lkge
  VIMSS5780670 219 QFEHTLLVADEGSYIHFIEGCsapmykgfsFHDGMVEIYAHKGATVKFTTIQNWSRNVINFNNKRAIIEENAYVEWIEGSIGSKITYTYPSSVLKGE 315
                   99****************555555555555555*********************************999**************************** PP

         SUFBD  90 gaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHg 186
                   ga++  + v l +g    dtg+k  h +pntss+i+sk+++++++ +++rG++++ kga+++ a ++c++L+l+++++a+t+P+ + ++  + + H+
  VIMSS5780670 316 GARTAQYVVSLSNGPFMKDTGAKTWHLAPNTSSKIVSKSISANGGINIYRGLVRILKGAKNSTATVSCDSLILDEESKAYTYPHNQNDEPSASIIHE 412
                   ************************************************************************************************* PP

         SUFBD 187 AtvgkideeqlfYLmsRGlseeeArrlivrgf 218
                   At+gk+ e++lfY+ sRG+ eeeA++liv gf
  VIMSS5780670 413 ATTGKLGEDKLFYMNSRGIGEEEAKSLIVLGF 444
                   ******************************99 PP



Or compare VIMSS5780670 to CDD or PaperBLAST