PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS66851 to PF01458 (SUFBD)

VIMSS66851 has 481 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-73  232.1   0.1    4.2e-73  231.7   0.1    1.1  1  VIMSS66851  


Domain annotation for each sequence (and alignments):
>> VIMSS66851  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.1   4.2e-73   4.2e-73       2     218 .]     225     450 ..     224     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 4.2e-73
       SUFBD   2 qfertlivveegaevtiieeyagc............gvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkg 88 
                 qfe+t++v++eg++v+++   +gc            ++ve +v knA+ +y++vqnws++v+n++tkra +++++++e+v +slg+k+t+ +ps++l+g
  VIMSS66851 225 QFEHTIVVADEGSSVHYL---EGCtapvyskdslhaAIVEYYVMKNAHGRYTSVQNWSNSVYNMPTKRAWVEENGNMEWVGGSLGSKVTMIYPSSYLRG 320
                 99****************...555555555556666*********************************9999999*********************** PP

       SUFBD  89 egaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgA 187
                 ++a+++   ++la+ +   dtg+k++h +pntss+i++k+v+ +++++++rG+++++k+a ++++h++c++Ll++d++ ++t+P+ ei++ ++  +H+A
  VIMSS66851 321 RNATTSNLNIALAGPGTVKDTGAKAIHMAPNTSSKIIAKSVSLGDGKSIYRGLVRINKDAVNAKSHVQCDALLINDESVSYTMPHDEIYEPTANFTHEA 419
                 *************************************************************************************************** PP

       SUFBD 188 tvgkideeqlfYLmsRGlseeeArrlivrgf 218
                 tvgki  e+l YL+sRGlse+eA +liv gf
  VIMSS66851 420 TVGKIGTEELTYLRSRGLSEDEASSLIVLGF 450
                 *****************************99 PP



Or compare VIMSS66851 to CDD or PaperBLAST