PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS957204 to PF01458 (SUFBD)

VIMSS957204 has 371 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-53  165.8   0.0    7.8e-53  165.5   0.0    1.1  1  VIMSS957204  


Domain annotation for each sequence (and alignments):
>> VIMSS957204  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   0.0   7.8e-53   7.8e-53       8     218 .]     129     342 ..     123     342 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 7.8e-53
        SUFBD   8 ivveegaevtiieey....agcgvveivvgknAklkyv.evqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgegaeaelngvyl 100
                  + + ++ ++t++e+y    +g+  + + +g+nA+l+   ++  +++ +  +++  +++g++a++    +  +g+ +r + +++l+  gae+   g++l
  VIMSS957204 129 VRLAKNVSATLVETYagqgWGNRFSYFDLGENAQLQRLsRLSCEGGFTSLIEE--GRLGENAHLLTDWIGNKGADSRIDQRFDLTASGAELMSGGAFL 224
                  77899**********9999999*************766266666555555554..67788999999999***************************** PP

        SUFBD 101 akgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAtvgkideeqlf 198
                  a++kq+ d+ +  +h +++++s+++ ++ ++d+s+++   + +v+  aqk+d++q+ + Llls++a+++ kPelei+addvkc+HgA+vg++d+++lf
  VIMSS957204 225 AREKQRHDIMIITRHIAEGCRSRQKLRALADDESTVSLAVRTEVAASAQKSDGEQSLKGLLLSRNATINMKPELEIYADDVKCAHGAAVGELDPQALF 322
                  ************************************************************************************************** PP

        SUFBD 199 YLmsRGlseeeArrlivrgf 218
                  YL+sRG++ eeA++l++++f
  VIMSS957204 323 YLESRGIDPEEAKDLLIQSF 342
                  *****************998 PP



Or compare VIMSS957204 to CDD or PaperBLAST