NP_001309670.1 has 797 amino acids
Query: CNNM [M=181]
Accession: PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-37 113.3 0.4 5.2e-37 113.3 0.4 1.6 2 NP_001309670.1
Domain annotation for each sequence (and alignments):
>> NP_001309670.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.3 0.4 5.2e-37 5.2e-37 2 174 .. 203 366 .. 202 374 .. 0.91
2 ? -3.9 0.1 0.5 0.5 52 71 .. 566 585 .. 559 598 .. 0.60
Alignments for each domain:
== domain 1 score: 113.3 bits; conditional E-value: 5.2e-37
CNNM 2 iallllllsaffsaaEtAlvslsklrleelaekgn....kgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvi 92
++l+ll++s++fs+++++l++ls+++l+ ++g+ + a r+l+++++ ++lL tllign +vn++ s+l++ l+ + +a ++v+
NP_001309670.1 203 CLLILLCFSGLFSGLNLGLMTLSPYELQLYIASGTeqekRDAGRILPIRKKGNQLLCTLLIGNVVVNVGVSLLMDQLVGSGFA--------VLVA 289
678999*********************66655555333388888*********************************999995........5566 PP
CNNM 93 vtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseee 174
t i+vfGEi+P++l++k ++i +++p+++vl +l+yPl+w+++++++++l k+e + + ++ l +++++se++
NP_001309670.1 290 ATSCIVVFGEIIPQALCVKLGLPIGARTIPITQVLLFLMYPLTWPISKVLDIFL-----KEELTRSLERNKLVEMLKLSEKS 366
6*****************************************************.....9*****************99886 PP
== domain 2 score: -3.9 bits; conditional E-value: 0.5
CNNM 52 lLstlligntlvnillsala 71
l +t++++ t i++s ++
NP_001309670.1 566 LAVTIQVMSTCHKIFSSNYI 585
44566666666666655544 PP
Or compare NP_001309670.1 to CDD or PaperBLAST