PaperBLAST – Find papers about a protein or its homologs

 

Align P37908 to PF01595 (CNNM)

P37908 has 428 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-58  183.7   4.5      2e-58  183.1   4.5    1.1  1  P37908    


Domain annotation for each sequence (and alignments):
>> P37908  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   4.5     2e-58     2e-58       1     174 [.      11     184 ..      10     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 2e-58
    CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtllilvfGEi 103
             +i+++++++sa fs++Et++++l+++rl+++a++gn++akr++kll++p+rl+s +lign+lvnil+sal+t + ++l+  g+++v+iat+++t+++lvf+E+
  P37908  11 IILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLY--GDAGVAIATGVLTFVVLVFAEV 111
             5778888************************************************************************..79******************** PP

    CNNM 104 lPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseee 174
             lPkt+a+ ++ek+a  ++ +l  l+il++Plvwlln++++ ++r++G+      +  +++eelr++v es+++
  P37908 112 LPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIktDIVVSGSLSKEELRTIVHESRSQ 184
             ************************************************877778999************9986 PP



Or compare P37908 to CDD or PaperBLAST