PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS185035 to PF01595 (CNNM)

VIMSS185035 has 445 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-60  187.6   8.9    1.2e-59  187.1   8.9    1.2  1  VIMSS185035  


Domain annotation for each sequence (and alignments):
>> VIMSS185035  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   8.9   1.2e-59   1.2e-59       1     181 []      12     203 ..      12     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 1.2e-59
         CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae..........galavvi 88 
                  +++l+l+l++aff+aaE+A+vs++k++++ laekgnk+a  l+k+l+ p ++Lst++ig+t++ +++sa a++ ++e+la+          ++++v++
  VIMSS185035  12 ILILVLILINAFFAAAEMAMVSVNKSKIKMLAEKGNKKALLLKKVLKSPGNFLSTIQIGITFAGFFASASAATSISETLAQfmyklnipygNEISVIL 109
                  6789****************************************************************************9***************** PP

         CNNM  89 atvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv.kkeeepavteeelrslveeseeeGvieeee 181
                  +tv++++++lvfGE+lPk++al+++e+ial+ ++p++v+s++ +P+v++l++++nl++++lG  k+e++++v+++e++s++++++e+Gvi+++e
  VIMSS185035 110 ITVLLSYITLVFGELLPKRIALQKPEEIALMAIRPINVISKISTPFVKILSASTNLFIKILGLnKSEDKETVSKDEIKSMISIGQESGVIDKTE 203
                  *******************************************************************************************987 PP



Or compare VIMSS185035 to CDD or PaperBLAST