VIMSS25848 has 407 amino acids
Query: CNNM [M=181]
Accession: PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.4e-41 125.5 3.1 1.3e-40 125.1 3.1 1.2 1 VIMSS25848
Domain annotation for each sequence (and alignments):
>> VIMSS25848
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.1 3.1 1.3e-40 1.3e-40 9 180 .. 2 172 .. 1 173 [. 0.96
Alignments for each domain:
== domain 1 score: 125.1 bits; conditional E-value: 1.3e-40
CNNM 9 lsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtllilvfGEilPkt 107
ls +fsaaEtA+ +l++lrl+ l ek++++a+ ++++l++ + +L++++igntl++ +lsa+++ ++ l++ av ++++ t+l+l+fGEi+Pk+
VIMSS25848 2 LSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSALSAVIALFARALFG--IHAVGWSIGAGTVLTLLFGEIIPKS 98
899********************************************************************5..55888888888************** PP
CNNM 108 lalknaekialavapplrvlsillyPlvwllnllanlilrllGv.kkeeepavteeelrslveeseeeGvieee 180
lal ++ ++al +a++l++ + l+P+v ++ + ++lrl +v + + vt+++l +++ ++e+ G++ ++
VIMSS25848 99 LALCRPNAVALHTARFLQWSALMLTPFVQVFCMARSALLRLARVaCHTPSLRVTDDDLHTVLYAGEADGTVTSR 172
*********************************************99**********************99765 PP
Or compare VIMSS25848 to CDD or PaperBLAST