VIMSS535487 has 454 amino acids
Query: CNNM [M=181]
Accession: PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-44 135.8 0.8 1e-43 135.2 0.8 1.2 1 VIMSS535487
Domain annotation for each sequence (and alignments):
>> VIMSS535487
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.2 0.8 1e-43 1e-43 2 179 .. 12 203 .. 11 205 .. 0.98
Alignments for each domain:
== domain 1 score: 135.2 bits; conditional E-value: 1e-43
CNNM 2 iallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae............galavv 87
++++l++ +a+f+aaE++l++l+++++e+ a++g ++ + + + +++++ Ls ++g++ ++++++ l+++++++l ++ +a+ ++
VIMSS535487 12 AIAVLIFGNAVFVAAEFSLTTLDRSTVEANARTGGRRDRWIRRAHHRLSFQLSGAQLGISATTLAAGYLTDPMVEDLPHPwldavgipdrvgDAIMAF 109
56899*************************************************************************99****************** PP
CNNM 88 iatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseeeGviee 179
+a++ivt + +vfGE++Pk la++++ ++a av+ ++s ll+P+++l n an+i+r lGv +e ++a +++el slv++s+++G++++
VIMSS535487 110 LALLIVTSVSMVFGELVPKYLAVARPMSTARAVVAAQLLFSALLTPAIRLTNGAANWIVRRLGVepAEELRSARSPQELLSLVRSSARSGALDA 203
*****************************************************************999**********************9986 PP
Or compare VIMSS535487 to CDD or PaperBLAST