PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS548707 to PF01595 (CNNM)

VIMSS548707 has 400 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-51  158.0   1.5    1.4e-50  157.6   1.5    1.2  1  VIMSS548707  


Domain annotation for each sequence (and alignments):
>> VIMSS548707  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   1.5   1.4e-50   1.4e-50      21     174 ..       1     154 [.       1     160 [. 0.98

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 1.4e-50
         CNNM  21 vslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtllilvfGEilPktlalknaekial 118
                  ++++++rl++la++gn +a+r++ ll++pe+l+s +lign+lvnil+salat + ++l+  g+++v+iat+i+t+++l+f+E++Pkt+a+ ++ek+a+
  VIMSS548707   1 MTMNRYRLRHLAKQGNHSARRVEALLRHPEQLISLILIGNNLVNILASALATIIGMRLY--GDAGVAIATGILTFIVLIFSEVMPKTIAALYPEKVAF 96 
                  689********************************************************..79*********************************** PP

         CNNM 119 avapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseee 174
                   ++ +lr l++++ Plvw+ln+++ l++r lG+   + +++a++++elr++v es+++
  VIMSS548707  97 PSSFLLRPLQKIMLPLVWVLNKITLLLMRCLGIkqPTGSSHAMSKDELRTIVHESNAK 154
                  **********************************99******************9986 PP



Or compare VIMSS548707 to CDD or PaperBLAST