PaperBLAST – Find papers about a protein or its homologs

 

Align WP_000051871.1 to PF01595 (CNNM)

WP_000051871.1 has 441 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-47  146.0   4.6    8.7e-47  145.2   4.6    1.4  1  WP_000051871.1  


Domain annotation for each sequence (and alignments):
>> WP_000051871.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   4.6   8.7e-47   8.7e-47       1     181 []       8     199 ..       8     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 8.7e-47
            CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae...........gal 84 
                     +i++ll+++++f s +E+Al  ++k++l+ lae+g+++a+++l l e++  + ++ +ig + v il ++l++a+f  ++ +           +++
  WP_000051871.1   8 IIIVLLIIAAGFLSLTEIALAGARKVKLKILAEAGEERAQKVLDLQEQSADFFAASQIGLNAVAILGGILGEAAFRPFFVNlvdrfyegpwtQTI 102
                     6899**********************************************************************99999999999********** PP

            CNNM  85 avviatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGviee 179
                     ++++++++vt l+++f++++Pk+la+  +ekia+ v+ p+++++++++Pl+w +n++anl++rl++v++ +e+ +t +++ ++++++++ Gv+++
  WP_000051871.1 103 GFALSFTLVTSLFILFADLMPKRLAMIAPEKIAISVINPIQIFIKICKPLAWGINAIANLLFRLFKVNTTREDNITFDDISAVMDAGAQAGVLQK 197
                     *********************************************************************************************99 PP

            CNNM 180 ee 181
                     +e
  WP_000051871.1 198 QE 199
                     87 PP



Or compare WP_000051871.1 to CDD or PaperBLAST