PaperBLAST – Find papers about a protein or its homologs

 

Align WP_004259258.1 to PF01595 (CNNM)

WP_004259258.1 has 442 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-50  155.9   2.4    7.2e-50  155.2   2.4    1.2  1  WP_004259258.1  


Domain annotation for each sequence (and alignments):
>> WP_004259258.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   2.4   7.2e-50   7.2e-50       1     173 [.      16     197 ..      16     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 7.2e-50
            CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae........galavv 87 
                     l++++l +l+affsa+E+Alvsls++r+e++a +g+++ + ll++++np+++Lst+++g+t+ ni+++a ++ ++a  la+        ++l+ +
  WP_004259258.1  16 LLLVFLTALNAFFSASEMALVSLSRSRVEQKASEGDEQYQYLLSVIDNPTHFLSTVQVGITFLNIVAGASLADTLAAQLAPlfgdtsfaQTLSKI 110
                     5789*****************************************************************8888888888899******9999999 PP

            CNNM  88 iatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv.kkeeepavteeelrslveesee 173
                     i++vi+t++++vfGE++Pk++a +  ek al++++pl  + ++l+P++wll+   n++ r++ +  + +++ +t++e++ lv   e+
  WP_004259258.1 111 IILVILTFFTIVFGELFPKRIAQALKEKAALKMVRPLMAIGVVLKPFIWLLTITINGLARIFPIkFDSSDDDMTRDEIEYLVHTDET 197
                     999******************************************************************************987765 PP



Or compare WP_004259258.1 to CDD or PaperBLAST