PaperBLAST – Find papers about a protein or its homologs

 

Align WP_011014370.1 to PF01595 (CNNM)

WP_011014370.1 has 354 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-54  169.2   2.9    4.8e-54  168.8   2.9    1.1  1  WP_011014370.1  


Domain annotation for each sequence (and alignments):
>> WP_011014370.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   2.9   4.8e-54   4.8e-54       1     181 []       8     202 ..       8     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 4.8e-54
            CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae............ga 83 
                     l++++ll ++aff+aaE+Al+s ++ rl++l+ +g+kga+++l  +e+++ +L+  ++g+t+++++l+ +a++++a++++             ++
  WP_011014370.1   8 LLIIVLLSANAFFVAAEFALISSRRDRLDSLVSQGKKGAEKVLYATEHLSIMLAGAQFGITVCSLILGKVAEPAIAHFIEVpftswgvpndliHP 102
                     5789999************************************************************************99************** PP

            CNNM  84 lavviatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseeeGv 176
                     +++via++i+t l+++fGE++Pk++a++ +e++ +++ap+l  ++++++Pl+ ++n++a+l lr +Gv  k+e +++v++e+l s+++es++eG 
  WP_011014370.1 103 ISFVIALAIITWLHILFGEMVPKNIAIAGPETLGMWLAPVLIAFVKITRPLIEFMNWIARLTLRAFGVeqKNELDSTVDPEQLASMISESRSEGL 197
                     *********************************************************************************************** PP

            CNNM 177 ieeee 181
                     +++ee
  WP_011014370.1 198 LDAEE 202
                     *9997 PP



Or compare WP_011014370.1 to CDD or PaperBLAST