PaperBLAST – Find papers about a protein or its homologs

 

Align WP_013081656.1 to PF01595 (CNNM)

WP_013081656.1 has 421 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-54  168.7  11.8    7.9e-54  168.1  11.8    1.2  1  WP_013081656.1  


Domain annotation for each sequence (and alignments):
>> WP_013081656.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1  11.8   7.9e-54   7.9e-54       2     179 ..      11     185 ..      10     187 .. 0.96

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 7.9e-54
            CNNM   2 iallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtll 96 
                     i+++ll lsaffs+aEtA++s++k+rl++ aek+ +g+k++l++ e+ e++Lst+l+gn +vni++s+la++++ ++++ g+la+vi+++++t++
  WP_013081656.1  11 ILVVLLMLSAFFSSAETAFSSVNKIRLKHYAEKKYRGSKKALHIAEHFEQTLSTILVGNVVVNIAASSLAAKIALDMFK-GNLALVISIIVMTII 104
                     7899**************************************************************************9.9************** PP

            CNNM  97 ilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGviee 179
                     il+fGE+lPk+la+++ae++al+++ +l ++++ll+P+++l+ ++ ++   ll   ++ +p++te+e++ +v++seeeG+i++
  WP_013081656.1 105 ILIFGEVLPKSLAKEHAESFALMISSLLFIIIKLLTPISFLFLQVKKGASHLL--TSAPTPTITEDEIKVMVDLSEEEGTINN 185
                     *****************************************999888888555..89***********************986 PP



Or compare WP_013081656.1 to CDD or PaperBLAST