PaperBLAST – Find papers about a protein or its homologs

 

Align WP_023976540.1 to PF01595 (CNNM)

WP_023976540.1 has 429 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-59  184.6   5.2    9.6e-59  184.2   5.2    1.2  1  WP_023976540.1  


Domain annotation for each sequence (and alignments):
>> WP_023976540.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   5.2   9.6e-59   9.6e-59       2     181 .]       9     202 ..       7     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 9.6e-59
            CNNM   2 iallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae............gal 84 
                     i++ll+l+++ff+aaE+A+v+++k+r+e+l+ +gnk+ak  lk+++n++ +Ls +++g+tl++++l+++++++++++l +            +++
  WP_023976540.1   9 IVILLVLMNGFFVAAEFAVVKVRKSRIETLVLEGNKSAKHTLKVVNNLNSYLSGCQLGITLASLGLGWIGEPAVSDMLMPlfnlfnisegtaHSI 103
                     567777************************************************************************99*************** PP

            CNNM  85 avviatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseeeGvi 177
                     ++v+ + i+t+l++v+GE++Pk+la+  aekia++++ pl +++ l+yP++wl+n+ +n+il+++G    +e+e a+t+ee++ lvees+++G i
  WP_023976540.1 104 SFVLGFSIITTLHIVLGELVPKSLAIITAEKIAMLTSLPLIMFYNLTYPIMWLFNHTTNFILKIFGLsqVDEHEAAHTDEEIKLLVEESYKHGLI 198
                     ********************************************************************99************************* PP

            CNNM 178 eeee 181
                     +++e
  WP_023976540.1 199 DKTE 202
                     *987 PP



Or compare WP_023976540.1 to CDD or PaperBLAST