PaperBLAST – Find papers about a protein or its homologs

 

Align WP_101933331.1 to PF01595 (CNNM)

WP_101933331.1 has 445 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-56  175.6   4.7    6.1e-56  175.0   4.7    1.1  1  WP_101933331.1  


Domain annotation for each sequence (and alignments):
>> WP_101933331.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   4.7   6.1e-56   6.1e-56       1     180 [.       9     200 ..       9     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.0 bits;  conditional E-value: 6.1e-56
            CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae............ga 83 
                     +i+l+l++++++f+++E+++v+ +k+rle+++++gn++ak++l l en+++lLst++ig+tl+ i+++a+++a++a+ ++             ++
  WP_101933331.1   9 IILLVLIIANGIFAMTEIGVVTSRKIRLEQKVKEGNSKAKTALYLAENSSELLSTIQIGITLIGIISGAFGGAAIADDVSVylseipflapwsTE 103
                     6889**********************************************************************99988778999********** PP

            CNNM  84 lavviatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGvie 178
                     +++v++++++t+l+lv+GE++Pk+++l n+ek+alava+p++++s++ +Pl+w+l+++++l l++lG+k+ +ep vteee+++++e++ ++G ie
  WP_101933331.1 104 ISMVLVVTLTTFLTLVIGELTPKQIGLTNPEKVALAVAKPMYFFSKVAKPLIWILDQSTKLALKTLGIKTTNEPDVTEEEIQQMIEQGVHSGSIE 198
                     **********************************************************************************************9 PP

            CNNM 179 ee 180
                     e 
  WP_101933331.1 199 EI 200
                     85 PP



Or compare WP_101933331.1 to CDD or PaperBLAST