NP_001184943.1 has 1315 amino acids
Query: Cas_Cas4 [M=161]
Accession: PF01930.21
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.1e-11 28.6 0.0 1.7e-10 27.4 0.0 1.7 1 NP_001184943.1
Domain annotation for each sequence (and alignments):
>> NP_001184943.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.4 0.0 1.7e-10 1.7e-10 16 160 .. 488 660 .. 482 661 .. 0.69
Alignments for each domain:
== domain 1 score: 27.4 bits; conditional E-value: 1.7e-10
Cas_Cas4 16 wlfsheitmeeeselvelGkliheesykrek....keveise...............sikiDvvkkekeklvvvevKkskki....eeaaklQll 87
w+ + +++ ++e ++v++G +i +++ k ++ +e+++ ++ D+ + +ek+++ e K++k+ + ++ +Q+
NP_001184943.1 488 WIEHFRYSKDSEVSKVDFGSTIGKKAVKVSEvidiEEMSW-ApkyglkgmidasvrvIVESDMNT-VNEKIMPLEFKSGKAPsgqsSIEHSAQVI 580
6666677777777888888888876666543344444444.134566333333333344445544.6799999*****9987555577899**** PP
Cas_Cas4 88 yYlllLekkgieak..Gvleypkekkreevelteedreel....eeaikeieeiisse.kppepkkkkiCkkCayaelCl 160
Y ll++++ ++ G l+y+++ +++ +++++ d l +e ++i +++ pp ++ +iC++C ++C
NP_001184943.1 581 LYTLLMSERYLKHIdnGLLYYLQSDQTQGISVQRSDLVGLiirrNELANDILVASTTQqLPPMLRNPNICRNCRHLDVCT 660
*******888876559****************999876542332455566665555551566677778***********7 PP
Or compare NP_001184943.1 to CDD or PaperBLAST