PaperBLAST – Find papers about a protein or its homologs

 

Align Q9URU2 to PF01930 (Cas_Cas4)

Q9URU2 has 1397 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.20
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-10   25.5   0.0    1.7e-09   24.2   0.0    1.7  1  Q9URU2    


Domain annotation for each sequence (and alignments):
>> Q9URU2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.7e-09   1.7e-09      67     161 ..     592     689 ..     537     690 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.7e-09
  Cas_Cas4  67 lvvvEvKkskkkeeaa.klQllyYlllLe.kkgveikeGvleypkekkree.velteedreelekaikeieeiissekppevkkkkiCkkCayaelCl 161
               + ++E+K ++   + +  +Q l Y ll+  + g++ +++ l y+++   ++ v  ++++r  +    + +++ ++++ p+  +++kiC +C++   Cl
    Q9URU2 592 TLPLELKTGRYVDNIShFAQSLLYTLLISdRYGINTNQALLCYLENSTIKNlVASNSQLRGLIMTRNSLAQHNFRRSLPEMISNRKICDHCSLVSECL 689
               456999999998665449***********9***************999988688888999999999999999999999999**************997 PP



Or compare Q9URU2 to CDD or PaperBLAST