SwissProt::Q1CW50 has 568 amino acids
Query: Cas_Cas4 [M=162]
Accession: PF01930.20
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-24 71.5 0.0 7e-24 70.9 0.0 1.3 1 SwissProt::Q1CW50
Domain annotation for each sequence (and alignments):
>> SwissProt::Q1CW50
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.9 0.0 7e-24 7e-24 5 162 .] 37 209 .. 33 209 .. 0.89
Alignments for each domain:
== domain 1 score: 70.9 bits; conditional E-value: 7e-24
Cas_Cas4 5 inyyliCkrklwlish.eitleeesetvelGkllheesyer.ekkevel.se....sikiDvvekekeklvvvEvKkskkk.......eeaa 82
++ +++C+r ++l ++ e+++++ v +G+ lh + +e+ e+ e+el se ++++D+v++++++lvv+E+K++++ ++++
SwissProt::Q1CW50 37 LHALAYCERLFYLEEVeELRVADA--AVFAGRRLHVQLQEEgEHVELELaSEalglHGRVDAVKTREGTLVVYEHKRGRHApggdapeAWPS 126
67899**********967777776..9999*****988888566888887779999************************999999986666 PP
Cas_Cas4 83 .klQllyYlllLekk..gveikeGvleypkekkreevelteedreelekaikeieeiisse.kppevkkkkiCkkCayaelCli 162
+lQ +Y+ll+e++ g ++ ++y+++ +++ l++++r ++ a+++++ + +s +pp+++++++C kC++a++Cl+
SwissProt::Q1CW50 127 dRLQAGAYALLVEERfpGAPVE-CRVRYHQTDTTVRFPLDAALRGAVVAAVARARLLRASReRPPVTQEERKCAKCSLAPVCLP 209
6************654588888.99******************************99877659*******************86 PP
Or compare SwissProt::Q1CW50 to CDD or PaperBLAST