PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1244842 to PF01930 (Cas_Cas4)

VIMSS1244842 has 190 amino acids

Query:       Cas_Cas4  [M=161]
Accession:   PF01930.21
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-16   44.9   0.5      1e-15   44.3   0.5    1.3  1  VIMSS1244842  


Domain annotation for each sequence (and alignments):
>> VIMSS1244842  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.5     1e-15     1e-15       4     159 ..      14     187 ..      11     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1e-15
      Cas_Cas4   4 kinyyliCkrklwlfsh.eitmeeeselvelGklihe........esykrek............keveise.......sikiDvvkkekeklvvvev 72 
                    i+++ +C+r +++ +   i++++   ++++G+  h+        +     +             +++          ++ +D+v +++++++vve+
  VIMSS1244842  14 LIRQWCFCPRIVYYQELlAIKPNKP-LWIAQGEEFHKkveqlekrR-----SfsryglnnairhFNLS--IksqkyklHGIVDWVIETDTNVYVVEY 102
                   689999********99878888888.77888******665555552.....13444444466332333..134567779999*************** PP

      Cas_Cas4  73 Kkskki.eeaaklQllyYlllLekkgieakGvleypkekkreevelteedreeleeaikeieeiissekppepkkkkiCkkCayaelC 159
                   K   +  +  +klQ+++Y+ll+++   +   + ++ + kk  e+++t+e  ++l ++i++i + ++s + p  + +   ++C+y+++C
  VIMSS1244842 103 KTNPNPnSLGHKLQIAAYALLVQEYFAKPCKTTFLTSDKKSYEIKITDELINKLIKTISDILSTLDSGNKPDSSAS---EQCEYYNFC 187
                   *9866516688************999998888999999************99999999999999999988877766...578899999 PP



Or compare VIMSS1244842 to CDD or PaperBLAST