VIMSS182120 has 190 amino acids
Query: Cas_Cas4 [M=162]
Accession: PF01930.20
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8e-20 57.8 0.0 9.4e-20 57.5 0.0 1.0 1 VIMSS182120
Domain annotation for each sequence (and alignments):
>> VIMSS182120
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.5 0.0 9.4e-20 9.4e-20 3 160 .. 8 180 .. 6 182 .. 0.87
Alignments for each domain:
== domain 1 score: 57.5 bits; conditional E-value: 9.4e-20
Cas_Cas4 3 tkinyyliCkrklwlisheitleeesetvelGkllheesyer.ek....kevelse.......sikiDvvekekeklvvvEvKkskkkee...aaklQ 85
+ i++yl+C+ +++i+ + e e++++Gk ++ e+ e k +++e s +++D+v +++ ++EvK k+ ++ +k+Q
VIMSS182120 8 SLIRQYLYCPAAAYYIMTGAA-EPPTERMRAGKEVQREAVEAvAKalgaEKIEHSPrleggglCGVVDAVLWLRGRPAPLEVKLAKPPRKipvHHKAQ 104
5799************99875.555589*********77777433466666666446788889999****9999999999999888764422267*** PP
Cas_Cas4 86 llyYlllLe.kkgveikeGvleypkekkreevelteedreelekaikeieeiissekppevkkkkiCkkCayaelC 160
+Y++ + + g + +++++y ++ + + + lt+++ e +++++++i++i + +p ++ + +C +C y+++C
VIMSS182120 105 AAAYAVAAQhHYGKAVASAYIYYTETGEVKYIALTRDLVELVKHTAQQIRKIQNGWTPTPAYHPAKCPSCWYRKYC 180
*********9*********************************************9999999999*********** PP
Or compare VIMSS182120 to CDD or PaperBLAST