VIMSS193910 has 919 amino acids
Query: Cas_Cas4 [M=161]
Accession: PF01930.21
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-15 41.8 6.9 6.5e-15 41.8 6.9 3.3 3 VIMSS193910
Domain annotation for each sequence (and alignments):
>> VIMSS193910
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.5 0.69 0.69 94 122 .. 42 71 .. 38 84 .. 0.59
2 ? 1.7 0.1 0.013 0.013 3 45 .. 689 731 .. 687 759 .. 0.71
3 ! 41.8 6.9 6.5e-15 6.5e-15 47 160 .. 792 916 .. 758 917 .. 0.79
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 0.69
Cas_Cas4 94 ekkgieak.Gvleypkekkreevelteedr 122
+k +eak ++ ++k +e+el ++r
VIMSS193910 42 INKEVEAKkIMITTFTNKAAKELELRINER 71
566777776667777777777777754433 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.013
Cas_Cas4 3 vkinyyliCkrklwlfsheitmeeeselvelGkliheesykre 45
++i y +C+ k +l+ ++ +++ +lG + h+ ++ +
VIMSS193910 689 TDIALYRYCPMKYFLVREKEYSTFDKKVFNLGIITHKAIEHIN 731
78999**********9998877888889999999998333222 PP
== domain 3 score: 41.8 bits; conditional E-value: 6.5e-15
Cas_Cas4 47 kevei.se...sikiDvvkkekeklvvvevKkskki....eeaaklQllyYlllLe.kkgieakGvleypkekkree.velt.eedreeleeaikeie 133
e+++ ++ ++iD++ ++++++ +++ K +k + + + Ql Y llL+ k + e+k +l+y++e + ++ + ++ e+ +e le++ k ++
VIMSS193910 792 SEFRVeDNyilYGQIDLILEDENEIKIIDFKTGKYNefefSSNYRQQLSLYKLLLQkKYDKEIKTYLYYLEEDEPKKeILIDdEDLKEDLENINKTVQ 889
44444222555699******************996544447788************999***********9987555366651556788********* PP
Cas_Cas4 134 eiissekppepkkkkiCkkCayaelCl 160
+i++++ p p +++iC C+++++C+
VIMSS193910 890 DILDKKFPKIPYNQNICGICEFKNYCW 916
*****99999****************9 PP
Or compare VIMSS193910 to CDD or PaperBLAST