PaperBLAST – Find papers about a protein or its homologs

 

Align WP_012094487.1 to PF01930 (Cas_Cas4)

WP_012094487.1 has 165 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.20
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-55  172.4   6.9      5e-55  172.2   6.9    1.0  1  WP_012094487.1  


Domain annotation for each sequence (and alignments):
>> WP_012094487.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.2   6.9     5e-55     5e-55       2     161 ..       3     158 ..       2     159 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.2 bits;  conditional E-value: 5e-55
        Cas_Cas4   2 gtkinyyliCkrklwlisheitleeesetvelGkllheesyer.ekkevelsesikiDvvekekeklvvvEvKkskkkeeaaklQllyYlllLek 95 
                     gt i+yy++C+rklwl+ h+i+le+ese+v +Gk+lh+++y+r e++e+++++ +kiD +e    + ++ E+K  +k++ea+++QllyYl  L+k
  WP_012094487.1   3 GTYIHYYFVCHRKLWLFVHQIQLEKESERVIEGKILHDSTYQRmEHRELDIDGVGKIDEIE----GEYIREIKLTSKMQEADRWQLLYYLAELKK 93 
                     899****************************************777*****99********....99**************************** PP

        Cas_Cas4  96 kgveikeGvleypkekkreevelteedreelekaikeieeiissekppevkkkkiCkkCayaelCl 161
                     +gv+ k G l y kek++eev+lte++++ele++ k+i++ii s+kpp+ +kkk+C++Cay+++C+
  WP_012094487.1  94 RGVTKK-GLLSYKKEKRTEEVHLTEANQQELENIQKRIQAIILSDKPPKLEKKKYCSSCAYYDFCF 158
                     ******.**********************************************************9 PP



Or compare WP_012094487.1 to CDD or PaperBLAST