PaperBLAST – Find papers about a protein or its homologs

 

Align WP_013160297.1 to PF01930 (Cas_Cas4)

WP_013160297.1 has 533 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.20
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-26   80.1   0.0    1.5e-26   79.6   0.0    1.2  1  WP_013160297.1  


Domain annotation for each sequence (and alignments):
>> WP_013160297.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.5e-26   1.5e-26       2     162 .]       9     184 ..       8     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.5e-26
        Cas_Cas4   2 gtkinyyliCkrklwlisheitleeesetvelGkllhe....esyerek......kevel.se....sikiDvvekekeklvvvEvKkskkk... 78 
                     ++ + + ++C+r++wl +++ + ++    + +G l h      +    +      + v++ se    ++++Dvve + ++l vvE+K+   +   
  WP_013160297.1   9 ISLVAHTVFCPRRAWLEAQGEQADSY--AMTAGTLAHRrvdqPA----EsrpevrRAVSVhSEslgiTGRCDVVEVSSDGLSVVEYKSTPVRrka 97 
                     57899*************99876655..9999*****9555422....2234457999997779999*******************987554334 PP

        Cas_Cas4  79 ..eeaaklQllyYlllLekkgveikeGvleypkekkreevelteedreelekaikeieeiisse.kppevkkkkiCkkCayaelCli 162
                       ++a+ +Q+  + ++Le++g ++++Gv+++++  k + v l +e+re+ ++ ++e +++++ + +pp+  +++ C+ C+ a +Cl+
  WP_013160297.1  98 eiTPAQAVQVGLQSMCLEEMGHHVTSGVVHFVNHHKDVPVPLGAEAREACRDWVTETRKVVEADsAPPPLLDDSRCNGCSHATICLP 184
                     4477889*******************************************************9978999999*************85 PP



Or compare WP_013160297.1 to CDD or PaperBLAST