PaperBLAST – Find papers about a protein or its homologs

 

Align WP_014261711.1 to PF01930 (Cas_Cas4)

WP_014261711.1 has 217 amino acids

Query:       Cas_Cas4  [M=161]
Accession:   PF01930.21
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-33  102.2   2.1    2.3e-33  101.8   2.1    1.2  1  WP_014261711.1  


Domain annotation for each sequence (and alignments):
>> WP_014261711.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   2.1   2.3e-33   2.3e-33       3     160 ..      11     198 ..       9     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 2.3e-33
        Cas_Cas4   3 vkinyyliCkrklwlfsheitmeeeselvelGklihe......esykrek....kevei.se....sikiDvvk..kekeklvv........... 69 
                     + i++y++Ckr+++l+++e +++e+++++e G ++he       ++kr+     + v + s+    s++iDv++  k  ++  +           
  WP_014261711.1  11 SGIQHYYFCKRQWALIHIEQQWAENQSTME-GNYLHEkadmpfLKEKRRGflmsRAVPVsSKrlglSGVIDVIEfqK--SDHGIklnrhkgtwfp 102
                     679***************************.******888776344443366678999954489999*******643..3333336999999999 PP

        Cas_Cas4  70 ..vevKkskkieeaa.klQllyYlllLe.kkgieak.GvleypkekkreevelteedreeleeaikeieeiissekppepkkkkiCkkCayaelC 159
                       +e+K++k++ ++   +Ql++++++Le k +i+++  +l+y k++kr ev++t+e r+++ e+ ++++++ +++k+p+++  k C+ C+++++C
  WP_014261711.1 103 eiIEYKRGKEKPDERdIVQLCAQVICLEeKWDIKIDkSYLYYFKTNKRLEVSITDELRKKVIEISNDMHHLYHQQKIPPAEFFKNCQLCSLYDIC 197
                     99******988655549***********999**************************************************************** PP

        Cas_Cas4 160 l 160
                     +
  WP_014261711.1 198 M 198
                     8 PP



Or compare WP_014261711.1 to CDD or PaperBLAST