PaperBLAST – Find papers about a protein or its homologs

 

Align XP_755899.1 to PF01940 (DUF92)

XP_755899.1 has 372 amino acids

Query:       DUF92  [M=251]
Accession:   PF01940.20
Description: Integral membrane protein DUF92
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-81  257.6   8.2    8.5e-81  257.0   8.2    1.3  1  XP_755899.1  


Domain annotation for each sequence (and alignments):
>> XP_755899.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.0   8.2   8.5e-81   8.5e-81       2     250 ..       9     346 ..       8     347 .. 0.90

  Alignments for each domain:
  == domain 1  score: 257.0 bits;  conditional E-value: 8.5e-81
        DUF92   2 lalllaalayrkksltlsGalaavlvgvlillaplglaffllllvFfllgsllTkvkkeeKekaglaeekega......RdavqVlanglvalllall 93 
                  ++l+la +a+++k+lt+ G+++avl++++++l+p++ + f+ll+vF+l gs++Tkvk+e+K++++l   ++ga      R+++qVlan++va++l+ll
  XP_755899.1   9 AVLALAHRAWSRKTLTPLGIITAVLTAIAHVLHPWS-TPFALLAVFYLGGSKVTKVKHEVKSRLTLS--ATGAeggetqRTHIQVLANSVVATVLVLL 103
                  5799********************************.7************************74443..3222223566******************* PP

        DUF92  94 yalle.......skella...elssllllgfvaslaaalaDTlaSElGkllskkprlit..tlkkvppGtnGgVsllGtlagllGalliallalllll 179
                  +a++        ++e+++   ++ ++l++gfva++aa++aDT++SElG l+++kprlit  tl+ vppGtnGgV+++G+lagllGa+ ia+++++l+ 
  XP_755899.1 104 HAWVLvygaekeEEECFSlgrRAGDVLVVGFVANYAAVAADTFSSELGILSKSKPRLITspTLRVVPPGTNGGVTATGLLAGLLGAFSIAVTSAILIP 201
                  765559***9987788845678999***********************77777******7778***************************99554444 PP

        DUF92 180 lak........qlklillvtlaGllGsllDSllGAtlqasvvdketgkvvekkvk........................................... 226
                   ++        +l+++l++t++G+lGs++DS+lG +lqasvvdk++gk+ve+++                                            
  XP_755899.1 202 YCSgeasgpvsRLQWVLAMTVWGTLGSVVDSILGGLLQASVVDKRSGKIVEGTGGgkvlvhpsstrfgstapvsgfsrstdgsvhlrnteevanaavl 299
                  333556688889****************************************444456788999********************************** PP

        DUF92 227 ......................esrki.sGldlldNeaVNllstllg 250
                                        esr++ sG+d+ldN+aVN+l+++++
  XP_755899.1 300 kgtratgtsrgmspgratephhESRRVeSGWDVLDNNAVNVLMAFMM 346
                  **********************999999****************998 PP



Or compare XP_755899.1 to CDD or PaperBLAST