PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10444 to PF01969 (Ni_insertion)

VIMSS10444 has 422 amino acids

Query:       Ni_insertion  [M=375]
Accession:   PF01969.21
Description: Nickel insertion protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-145  470.1   0.0   3.3e-145  469.9   0.0    1.0  1  VIMSS10444  


Domain annotation for each sequence (and alignments):
>> VIMSS10444  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  469.9   0.0  3.3e-145  3.3e-145       1     374 [.       5     403 ..       5     404 .. 0.96

  Alignments for each domain:
  == domain 1  score: 469.9 bits;  conditional E-value: 3.3e-145
  Ni_insertion   1 lyldcfsGisGDmllgaLldlgvdeeeleeeleklgl.eeveleiekvkksgisatkvevel...eeeeeheh.......rslkeieeiiekselse 86 
                   +y+dc +GisGDm+lgaL+++gv+ e+l+e+l+ lgl +e++l++  v+k+g++atkvev+l   +    h+h       r+l eie++i++++l++
    VIMSS10444   5 AYFDCPTGISGDMCLGALVSAGVPLEYLMEKLAPLGLtDEYRLTAGLVQKQGQAATKVEVKLlndH----HSHgpghhgmRHLPEIEQLIKQANLPA 97 
                   59***********************************9**********************985541....4444555677***************** PP

  Ni_insertion  87 kvkekalaiferlaeAeakvhgvpleevhfhEvGavDaivdivgaalaleelgvekvvasplalGsGtvkcahGilPvPaPatlellkglkvkl..g 181
                   +v +++laif++la Ae++vhg+++e vhfhEvGa+Daivdivg++l+l++lg+++++ s+l++GsGtv++ahG lPvP+Pa+l+l+++ +v +  +
    VIMSS10444  98 RVSRWSLAIFHQLAIAEGEVHGIEPEAVHFHEVGATDAIVDIVGTCLGLDYLGIDQCYWSALPTGSGTVRAAHGDLPVPVPAVLKLWQTRQVPVydN 194
                   ****************************************************************************************999999999 PP

  Ni_insertion 182 evegElvTPTGaAilaaladefgslpamkvekvGyGaGkrdleeipnvLrvll............eeeeeleeeevvvletniDDmtpevlgyviek 266
                   + +gElvTPTGaAi+ +la++fg+ p+++++kvG+GaG++d+   +n+Lr+++            +e+   + e+++vlet++DD++p+++gy++e+
    VIMSS10444 195 GLTGELVTPTGAAIAVTLASQFGPKPPLNLHKVGLGAGSKDF-PLANILRLWIgteitphnhplsSEAPFGQLETITVLETQLDDIQPQAVGYLLES 290
                   9*****************************************.8*************9999998655666999************************ PP

  Ni_insertion 267 lleaGAlDvfltpilmKKnRpgvlltvlckeekaeklaeilfretttlGvReseveRlvleReieevetelgevrvKva.....kekeivkvkpEye 358
                   ll++GA Dvf+++i mKK+Rpg+lltvlc +e+++++ ++lfrett+lGvR+++++R++leRe+++v +++g++r+Kva     ++k i++++pE+ 
    VIMSS10444 291 LLHQGAIDVFTQAIAMKKSRPGILLTVLCAPENQNHCLNLLFRETTSLGVRVRQQQRYALEREWQTVVIPHGPIRIKVAygyqaGKKIILNAHPEFA 387
                   **********************************************************************************9878889******** PP

  Ni_insertion 359 dlkkiAeetglplkev 374
                   d++++A++tg p++ +
    VIMSS10444 388 DCAALAKATGQPWQLI 403
                   ************9876 PP



Or compare VIMSS10444 to CDD or PaperBLAST