PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10322614 to PF01982 (CTP-dep_RFKase)

VIMSS10322614 has 235 amino acids

Query:       CTP-dep_RFKase  [M=121]
Accession:   PF01982.20
Description: Domain of unknown function DUF120
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-49  151.4   0.0    8.7e-49  150.8   0.0    1.3  1  VIMSS10322614  


Domain annotation for each sequence (and alignments):
>> VIMSS10322614  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   8.7e-49   8.7e-49       1     121 []     105     231 ..     105     231 .. 0.95

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 8.7e-49
  CTP-dep_RFKase   1 VvsGlgeGkyyvslegykeqfeeklgfePypGTLNvkldeeslelrkaleklkgieiegfeeeertfgevkaypakiegieaa......vvvper 89 
                     V+sG+geG++y+sl+gy++qfe++lg+eP+pGTLNv+l+ es+++r+a+++l+++ i+g+e+++rt+g + +y a+ie+++++       ++per
   VIMSS10322614 105 VTSGMGEGRHYISLSGYQRQFEDRLGYEPFPGTLNVDLRAESVRRRSAVSSLDPVPIDGWEDDDRTYGPAVCYAATIETADGQtyenahTIAPER 199
                     89***************************************************************************877544445555****** PP

  CTP-dep_RFKase  90 thypedvlEiiapvkLReklelkdgdeveiev 121
                     th++ed+lEiiap+kLR++lel+d+d+v+i+v
   VIMSS10322614 200 THHDEDQLEIIAPEKLRDELELADDDHVTISV 231
                     ******************************86 PP



Or compare VIMSS10322614 to CDD or PaperBLAST