PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2017766 to PF02130 (YbeY)

VIMSS2017766 has 165 amino acids

Query:       YbeY  [M=129]
Accession:   PF02130.21
Description: Endoribonuclease YbeY
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-44  136.1   1.6    4.1e-44  135.8   1.6    1.1  1  VIMSS2017766  


Domain annotation for each sequence (and alignments):
>> VIMSS2017766  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   1.6   4.1e-44   4.1e-44       4     128 ..      13     159 ..      10     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 4.1e-44
          YbeY   4 eeeleklikkvleaalkeeklkkeaelsvllvdneeikelnkeyrnkdkpTDVLSFpleeeeee.......................lGDivisvek 77 
                   ++e+ ++++++le a++++  k++ e+ v++v+ne+ +eln eyr++d+pTDV+S +++ e e                        +G+++is++k
  VIMSS2017766  13 SKEMLQQTQEILEFAAQKL-GKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIafdeedllenpelaemmsefdayIGELFISIDK 108
                   5677788889999988844.47788*********************************9999989******************************** PP

          YbeY  78 aeeqaeeyghslerelafllvHglLHLlGYDHeeeeeekeMeekeeeilkk 128
                   a+eqaeeyghs+ere++fl+vHg+LH+ GYDH ++eee+eM+ ++eeil++
  VIMSS2017766 109 AHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTA 159
                   ************************************************986 PP



Or compare VIMSS2017766 to CDD or PaperBLAST