PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS832265 to PF02130 (YbeY)

VIMSS832265 has 171 amino acids

Query:       YbeY  [M=129]
Accession:   PF02130.21
Description: Endoribonuclease YbeY
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-44  134.8   0.0      1e-43  134.5   0.0    1.1  1  VIMSS832265  


Domain annotation for each sequence (and alignments):
>> VIMSS832265  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0     1e-43     1e-43       5     128 ..      24     154 ..      21     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 1e-43
         YbeY   5 eeleklikkvleaalkeeklkkea.elsvllvdneeikelnkeyrnkdkpTDVLSFpleeeeee......lGDivisvekaeeqaeeyghslerelaf 95 
                  ++le+l++k + aa +++ lk+ + elsv+++d+++i+ ln e+r+kdkpT+VLSFp+   +        lGDivi+ e++e++a+e g+ +e++l++
  VIMSS832265  24 ASLESLVSKSVAAAWNNLGLKSATsELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGsqpgpmLGDIVIARETVEREAKEEGKPIENHLSH 121
                  5678888888888888888877655********************************9988888899******************************* PP

         YbeY  96 llvHglLHLlGYDHeeeeeekeMeekeeeilkk 128
                  l+vHg+LHLlGYDHe++ee+++Me++e+eil++
  VIMSS832265 122 LVVHGFLHLLGYDHETDEEAEVMEAREREILHA 154
                  *******************************87 PP



Or compare VIMSS832265 to CDD or PaperBLAST