PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001351509.1 to PF02130 (YbeY)

XP_001351509.1 has 594 amino acids

Query:       YbeY  [M=129]
Accession:   PF02130.21
Description: Endoribonuclease YbeY
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-20   57.4   1.0    4.6e-14   38.6   0.0    2.5  2  XP_001351509.1  


Domain annotation for each sequence (and alignments):
>> XP_001351509.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   4.6e-14   4.6e-14      13      82 ..     207     290 ..     194     302 .. 0.80
   2 !   16.7   0.3   2.9e-07   2.9e-07      88     128 ..     381     422 ..     374     423 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.6e-14
            YbeY  13 kvleaalkeeklkkeaelsvllvdneeikelnkeyrnkdkpTDVLSFpleeeeee...................lGDivisvekaeeqa 82 
                     k    +++ ++  k+++l++++v+ ee+k++nk++rnkd +TDV+S     ++ +                    GDi +++e++++++
  XP_001351509.1 207 K----LIEILN-YKNFHLNITFVSLEEMKRINKKHRNKDMATDVISILHYLDDPNydynydflknaiggkkgfkSGDIYLCPEYINREC 290
                     3....333222.36789*****************************75544444468****************************9987 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.9e-07
            YbeY  88 slerelafllvHglLHLlGYDHe.eeeeekeMeekeeeilkk 128
                     s++++l f++ Hg++HL+  DHe + ee +e  + ee+i+kk
  XP_001351509.1 381 SVNERLPFYVLHGFVHLMHKDHEnNVEEYNEFMDIEENIIKK 422
                     6789999****************6678889999999999987 PP



Or compare XP_001351509.1 to CDD or PaperBLAST