VIMSS1234 has 253 amino acids
Query: PDH_N [M=154]
Accession: PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-19 55.4 0.0 5.1e-19 54.5 0.0 1.4 2 VIMSS1234
Domain annotation for each sequence (and alignments):
>> VIMSS1234
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.5 0.0 5.1e-19 5.1e-19 1 150 [. 15 150 .. 15 153 .. 0.89
2 ? -3.4 0.0 0.35 0.35 120 141 .. 228 247 .. 224 250 .. 0.59
Alignments for each domain:
== domain 1 score: 54.5 bits; conditional E-value: 5.1e-19
PDH_N 1 laralrrkgfkvtvigydideekakaalelglvdeatddieavkeadivllavPvevilevlkelaphlkedalitDvgsvKekvvkelekllkgksfvg 100
+a++l++k+ v+ d+dee++ka +e g++ ++ + + + d+ +la P+ v ++ lke + i Dv+svK+ ++ +++ +f g
VIMSS1234 15 IALKLKEKH---HVTAFDRDEETMKALEENGIETVSKE--SDLYDTDLLVLALPMSVEERFLKETDF----SGKILDVASVKTPFMEIARERGL--NFTG 103
688888888...99*************99999998888..69**********************999....8899************9999988..**** PP
PDH_N 101 ghPmaGteksGvdaareelfenavviLtPtektdkealelvkelleevga 150
ghPmaG e +G e+f+++++ L+ + ++ + ++++++ga
VIMSS1234 104 GHPMAGNERKGKSGWDREMFDGKIFFLCSLDGKEDGM---IENIVKDLGA 150
****************************988655544...4455555555 PP
== domain 2 score: -3.4 bits; conditional E-value: 0.35
PDH_N 120 fenavviLtPtektdkealelv 141
f n ++ Lt +e d e l++v
VIMSS1234 228 FLNVLYHLTEKE--DFENLKKV 247
666677777666..44455554 PP
Or compare VIMSS1234 to CDD or PaperBLAST