PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS46070 to PF02153 (PDH_N)

VIMSS46070 has 275 amino acids

Query:       PDH_N  [M=154]
Accession:   PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-36  109.5   0.0    7.7e-36  109.1   0.0    1.2  1  VIMSS46070  


Domain annotation for each sequence (and alignments):
>> VIMSS46070  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   7.7e-36   7.7e-36       2     153 ..      16     164 ..      15     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 7.7e-36
       PDH_N   2 aralrrkgfkvtvigydideekakaalelglvdeatddieavkeadivllavPvevilevlkelaphlkedalitDvgsvKekvvkelekllkgksfvg 100
                 ++ l+++     v+g+d ++e+ k al+lgl+ e  + ++ +  +d++++a+Pv++i+e+l++l   l  +++i+ +gs+K k+++ l+k+l  k+   
  VIMSS46070  16 GLCLKENKLISCVYGMDLSKENEKDALQLGLIHELIE-FKDLALCDMIFVATPVNAIIEILQKLVD-LPSNVTIIELGSTKRKIIESLPKNLI-KQTLF 111
                 78899999999**************************.****************************.**************************.99999 PP

       PDH_N 101 ghPmaGteksGvdaareelfenavviLtPtektdkealelvkelleevgarvi 153
                 +hPm Gte+sG++aa++el+++av +L+++e  d    + + e++ ++g +++
  VIMSS46070 112 AHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLGMKIV 164
                 **********************************9***********9999986 PP



Or compare VIMSS46070 to CDD or PaperBLAST