VIMSS544202 has 591 amino acids
Query: PDH_N [M=154]
Accession: PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-09 24.1 0.0 1.1e-08 20.9 0.0 2.6 3 VIMSS544202
Domain annotation for each sequence (and alignments):
>> VIMSS544202
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.9 0.0 1.1e-08 1.1e-08 42 108 .. 41 104 .. 17 124 .. 0.87
2 ? -3.5 0.0 0.36 0.36 117 135 .. 178 196 .. 176 213 .. 0.62
3 ? -1.9 0.0 0.11 0.11 27 59 .. 346 380 .. 337 394 .. 0.81
Alignments for each domain:
== domain 1 score: 20.9 bits; conditional E-value: 1.1e-08
PDH_N 42 avkeadivllavPvevilevlkelaphlkedalitDvgsvKekvvkelekllkgksfvgghPmaGte 108
+ ++++ ++la+P + e+l +l++ + + +i+D++s K v+ +e+ +f + hP++G+
VIMSS544202 41 EFSKFKYAILAIPENSYNEILSKLKE-NNFNGVIIDLASKKDVVIPIIEQYGF--KFLSLHPLFGPS 104
4578899******************9.788999*****************999..**********94 PP
== domain 2 score: -3.5 bits; conditional E-value: 0.36
PDH_N 117 eelfenavviLtPtektdk 135
e l+e+++ iL + +k+ +
VIMSS544202 178 ERLLEQNPQILLDIQKEKN 196
5677777777777776332 PP
== domain 3 score: -1.9 bits; conditional E-value: 0.11
PDH_N 27 alelglvdeatdd..ieavkeadivllavPvevil 59
+ +l++++ ++ + ++a+++ +i+l vP+e +l
VIMSS544202 346 KTRLNIKYYRKIShiFDALENNEIALGIVPIENVL 380
55899999988887789999999999999999875 PP
Or compare VIMSS544202 to CDD or PaperBLAST