PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS533181 to PF02593 (DUF166)

VIMSS533181 has 291 amino acids

Query:       DUF166  [M=218]
Accession:   PF02593.18
Description: Domain of unknown function
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-78  248.1   0.3    5.3e-78  247.6   0.3    1.2  1  VIMSS533181  


Domain annotation for each sequence (and alignments):
>> VIMSS533181  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.6   0.3   5.3e-78   5.3e-78       1     217 [.       4     220 ..       4     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 247.6 bits;  conditional E-value: 5.3e-78
       DUF166   1 lvltsgkyGervvenilnesdfersivavvevpeeldefiedpeelLpe.lkeaDlviaytlhpDltlelaekakekgikaiivpaeapk....glrk 93 
                  +vl+sg+yGerv ++il+++  +  iv ++e+pe+l+e+i+d++e++pe lke+Dl+i++ l +D++l ++++ak++++k ii+++++pk    gl++
  VIMSS533181   4 TVLYSGNYGERVLNTILEKFAQN--IVSIHEIPENLPEYIDDVSEYVPEnLKESDLIISVGLFGDINLIVCDIAKKTNAKSIIIESHSPKqvtkGLKS 99 
                  599****************9999..9****************************************************************88888888 PP

       DUF166  94 elkekleelgievavpkpfCsleeegkpeideFlerfGrPelevevedgkikkVeVvrsapCGsTwyvakklkGkeveeaevkaglaiqnYpClAsme 191
                  e++++l+e  i++++pkpfCsl+++g+++ideF+++fG+Pe+e+ + +  +k+V V+r+apCGsT+yva++l+G++++e+e ++g++++nYpClAsm+
  VIMSS533181 100 EISDSLNE--IKIVFPKPFCSLKPVGDTYIDEFAKYFGSPEIEI-IGETIVKSVIVKRNAPCGSTKYVAENLTGYSLNEVEFESGNKLHNYPCLASMD 194
                  88888888..78********************************.999999*********************************************** PP

       DUF166 192 rdfelkdtklhkAgylhkeavekAlk 217
                  +d+e++dt+lh Agy +keav+k+lk
  VIMSS533181 195 VDNEIGDTILHLAGYKIKEAVKKSLK 220
                  ***********************998 PP



Or compare VIMSS533181 to CDD or PaperBLAST