PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS53077 to PF02622 (DUF179)

VIMSS53077 has 187 amino acids

Query:       DUF179  [M=157]
Accession:   PF02622.19
Description: Uncharacterized ACR, COG1678
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-58  183.6   0.0    1.5e-58  183.4   0.0    1.0  1  VIMSS53077  


Domain annotation for each sequence (and alignments):
>> VIMSS53077  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4   0.0   1.5e-58   1.5e-58       1     157 []      12     174 ..      12     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 183.4 bits;  conditional E-value: 1.5e-58
      DUF179   1 PsledpnFersVvllcehneegamGlvlNrpleltlkelleelleleaepaae.e.....pvylGGPveqdrlfvlhsle..lessleisdglyltgsl 91 
                 Ps++dp+F+rsV+++cehn++gamGl++N p+++t++ +l++ +++e +  ++ +     pv++GGPv++dr+f+lh+ +  +ess++++d++++t+s+
  VIMSS53077  12 PSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQ-VDIEPAYPQShQenlkkPVFNGGPVSEDRGFILHRPRdhYESSMKMTDDIAVTTSK 109
                 89****************************************.67776655543479*********************44679**************** PP

      DUF179  92 dilealaggagpeklrvflGyagWgagQLeeEieenaWlvvpasdeellfetppeelWeealrrlG 157
                 dil  l ++a+pe ++v+lGy+gW+agQLe E+ en+Wl+++a d+el+f+tp +e+W++a+++lG
  VIMSS53077 110 DILTVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEA-DPELIFNTPVHEKWQKAIQKLG 174
                 *******************************************.888*****************99 PP



Or compare VIMSS53077 to CDD or PaperBLAST