PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001395541.1 to PF02656 (DUF202)

XP_001395541.1 has 808 amino acids

Query:       DUF202  [M=68]
Accession:   PF02656.19
Description: Domain of unknown function (DUF202)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-18   51.5   4.0    5.6e-18   51.5   4.0    1.9  2  XP_001395541.1  


Domain annotation for each sequence (and alignments):
>> XP_001395541.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   4.0   5.6e-18   5.6e-18       1      67 [.     688     750 ..     688     751 .. 0.91
   2 ?   -1.2   0.1      0.17      0.17      13      32 ..     766     785 ..     764     794 .. 0.56

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 5.6e-18
          DUF202   1 rdglAnERTfLaWlRtslalialgvallrffleggptalalilglilivlgiltlllalvrylrrer 67 
                     ++++A+ERTfL+Wl +s++l++++++ll+f    +  +  +  +++++vl++++ll++l+ y++r+ 
  XP_001395541.1 688 KVYFAAERTFLSWLEFSILLATIAATLLNF--GDDYIT--FGSSWAFTVLAAVALLYSLMLYVWRVD 750
                     689**************************8..555555..999*********************975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.17
          DUF202  13 WlRtslalialgvallrffl 32 
                     W  t ++l+ + +++++f l
  XP_001395541.1 766 WGPTVVGLGLVVIVMVNFGL 785
                     55555556666666555533 PP



Or compare XP_001395541.1 to CDD or PaperBLAST