PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS157228 to PF02698 (DUF218)

VIMSS157228 has 344 amino acids

Query:       DUF218  [M=132]
Accession:   PF02698.21
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-32   98.6   0.0    1.9e-32   98.2   0.0    1.2  1  VIMSS157228  


Domain annotation for each sequence (and alignments):
>> VIMSS157228  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   1.9e-32   1.9e-32       1     132 []     164     313 ..     164     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 1.9e-32
       DUF218   1 daivVLGaal.......evlaaRldeaaelyreg.....k...iivsGg.ggdeevseaeamarylleelgvpe.rilledksrnTyenarfskell. 80 
                  d+ +VLG++l       ++la+Rl++a++ y ++     k   +ivsGg g++e++seaeam+ yl+e +g++e  i++ed+s nT +n++fsk+ + 
  VIMSS157228 164 DFLIVLGSGLiggdrvpPLLASRLNRAIKFYDKQyakkgKratFIVSGGqGANETISEAEAMRGYLIE-QGIDEnFIIMEDQSVNTLQNMKFSKAKMd 260
                  679****88888899999**********988777676552567******9888**************7.****77*********************** PP

       DUF218  81 ...gk.rvllVTsafHmpRalllfrkagaptllpsaealsasse..sqlraalrEylg 132
                      + + l+ T++fH++Ra +++rkag      +++ + a++   + ++a++rE+++
  VIMSS157228 261 aimSNyNSLFSTNNFHLFRAGIYARKAGL-----KSQGIGAKTAlyYMPNALIREFIA 313
                  ***55589*******************82.....223333222222477899999985 PP



Or compare VIMSS157228 to CDD or PaperBLAST