PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7753664 to PF02698 (DUF218)

VIMSS7753664 has 248 amino acids

Query:       DUF218  [M=132]
Accession:   PF02698.21
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-30   91.8   0.0    2.5e-30   91.3   0.0    1.2  1  VIMSS7753664  


Domain annotation for each sequence (and alignments):
>> VIMSS7753664  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   2.5e-30   2.5e-30       1     131 [.      91     238 ..      91     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 2.5e-30
        DUF218   1 daivVLGaal......evlaaRldeaaelyreg...kiivsGg.ggdeevseaeamarylleelgvpe.rilledksrnTyenarfskell...... 80 
                   d+ ++LGa++       +l+ Rld+a+++++ +   +++vsGg g++e+++ea+am++yl++ + +++ ri+ edks+nTyen+++sk  +      
  VIMSS7753664  91 DYLLILGASVkkttpsTTLKGRLDTALKYLKINdncYVVVSGGkGSGEKITEAKAMKDYLIK-NSIDKnRIIEEDKSTNTYENFKYSKLKIeehsqr 186
                   7899***99999999999************9998888******9888**************7.****77********************999***** PP

        DUF218  81 ..gk.rvllVTsafHmpRalllfrkag...aptllpsaealsasse..s.qlraalrEyl 131
                      + +v +VT +fH+ R+++l+ + g   +        +++as++  s  ++++ rE++
  VIMSS7753664 187 klSDlKVKIVTTDFHVLRSKILAYRNGyknT--------SFYASKSklSfVPTYYTREFF 238
                   **5559********************94321........222222212236678888876 PP



Or compare VIMSS7753664 to CDD or PaperBLAST