PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS270587 to PF02965 (Met_synt_B12)

VIMSS270587 has 1231 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.1e-131  422.4   0.0   7.2e-131  421.6   0.0    1.4  1  VIMSS270587  


Domain annotation for each sequence (and alignments):
>> VIMSS270587  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.6   0.0  7.2e-131  7.2e-131       2     273 .]     942    1212 ..     941    1212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 421.6 bits;  conditional E-value: 7.2e-131
  Met_synt_B12    2 leelveyidWtpffqaWelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpAnsegddievyadesrseelatlhtLrqq 96  
                    +e+l++yidWtpff++W+l+gkyp+ilede+vgeeak+l++dA+a+L+k+ +e+ll+ k+vvglfpAns+gddie+y+de+r+e+la  ++Lrqq
   VIMSS270587  942 IETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGEEAKRLLADANALLDKLSAEDLLHPKGVVGLFPANSVGDDIEIYRDERRDEVLAISYHLRQQ 1036
                    899******************************************************************************************** PP

  Met_synt_B12   97 aekeegkpnlclaDfvapkesgvkDyiGlFavtaglgieelakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdeklsneeli 191 
                    +ek ++ pn+claD+vapk+sg++Dy+G+Favt gl+ ++la++++a++ddY++i++kal+drLaeAfae+lhe+vrk +Wg+a++e+lsneel+
   VIMSS270587 1037 TEK-TDFPNYCLADYVAPKSSGKADYFGAFAVTGGLEEDALADAYDAQHDDYNKIMIKALSDRLAEAFAEYLHERVRKVYWGFAPNENLSNEELV 1130
                    998.689**************************************************************************************** PP

  Met_synt_B12  192 kekYqgiRpApGYpacpdhtekktlfelldaeekigieLteslamtPaasvsGlyfahpearyFavgkiekdqvedyakrkg 273 
                    +e+YqgiRpApGYpacp+htek ++++lld+e+++g++Ltes+am+P asvsG+yf+hp+++yFav++i++dqvedya+rkg
   VIMSS270587 1131 RENYQGIRPAPGYPACPEHTEKGQIWQLLDVETHTGMKLTESYAMWPGASVSGWYFSHPDSKYFAVAQIQRDQVEDYAARKG 1212
                    ********************************************************************************97 PP



Or compare VIMSS270587 to CDD or PaperBLAST