PaperBLAST – Find papers about a protein or its homologs

 

Align D7FDB0 to PF03235 (DUF262)

D7FDB0 has 115 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-17   49.7   1.0    2.9e-17   49.7   1.0    1.8  2  D7FDB0    


Domain annotation for each sequence (and alignments):
>> D7FDB0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   1.0   2.9e-17   2.9e-17       2      50 ..      10      69 ..       4      78 .. 0.79
   2 !    3.3   1.3    0.0045    0.0045     139     171 ..      60      92 ..      59     114 .. 0.67

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.9e-17
  DUF262  2 edllskskrglriPdfQRpyvW....eeeqveeLiedllalkgyplGsivlw.........s 50
            ++++++ +  + +Pd+QR+yvW    +e+++e+L++++  l+gyp+Gs+++w         s
  D7FDB0 10 KEVVDGLNVRYFLPDIQREYVWlqnaDEKKIEQLFDSI--LRGYPIGSFLFWklqkediakS 69
            45555555559************9999999********..************8887655431 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0045
  DUF262 139 sltkkdlakeekrneeknlikayevieeilksa 171
             +l+k+d+ak ++ +++k  +++y++i+++ +++
  D7FDB0  60 KLQKEDIAKSDEQDSDKLNFQLYQFITNYDERK 92 
             678899999999999999999999999843333 PP



Or compare D7FDB0 to CDD or PaperBLAST