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Align VIMSS1236715 to PF03235 (DUF262)

VIMSS1236715 has 629 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-41  127.3   0.6    5.2e-41  127.3   0.6    2.2  2  VIMSS1236715  


Domain annotation for each sequence (and alignments):
>> VIMSS1236715  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.6   5.2e-41   5.2e-41       2     221 .]       9     256 ..       8     256 .. 0.85
   2 !    3.5   2.4    0.0038    0.0038      72     172 ..     254     367 ..     254     399 .. 0.69

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 5.2e-41
        DUF262   2 edllskskrglriPdfQRpyvW.eeeqveeLiedlla..........lkgyplGsivlwskaads...ageleviDGQQRltTltlllaa.....t. 78 
                   ++l++++++ + +P +QR yvW +++q++ L+ed+l+            +++lG++vl ++ +++    +   +iDGQQRltTl+ +la      + 
  VIMSS1236715   9 QQLFQDRRQ-YCVPFYQRAYVWtQQDQWSALLEDILEkvqsrlsgtkPTPHFLGAVVLEPQSKKGllgVDSIHIIDGQQRLTTLQYVLASirlalRa 104
                   789****99.************9999********************99**********8444444678**********************8876515 PP

        DUF262  79 ..keesekriknleaeiek.ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdl.........akeekrneeknlikayev 163
                     ++++e+ i+ ++++++     +++ +r+k++++ +d+  + + ++ e+  ++    + +  s+t++           + e    + + +ik +++
  VIMSS1236715 105 tdLSSLEALISPCLKNSNEdTMRNKEVERFKLWPTFRDQTHFIQSFNVENIDDLR---DVFSDSFTQHGTlrkhfnhppSLEALCFFTEAFIKWIKI 198
                   6899999999999999999977789999*****9999998888888888877666...334445555555455567777777777777777777777 PP

        DUF262 164 ieeilksa...llsalktklslieieleseddedqayeiFerlNsrGvpLtasellkalll 221
                    ++ ++++   l++a+ t+l+l++i+le edd   a++iFe+lN rG +L a +l++++++
  VIMSS1236715 199 ENHSPQENavaLIEAVLTDLKLVSIFLEAEDD---AQIIFETLNGRGAELHATDLIRNYIF 256
                   77777777********************8888...***********************987 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0038
        DUF262  72 tlllaatkeesekriknleaeiek..ekeeededrlkrreresdkellqkllrseklslee.keelaelnsltkkdlakeekrneeknlikayevie 165
                   +++++a + e+ + i+ +e+e +    k+ ++++r  r  + + + l++  l+se  ++++  +  +e +++  kdl+++  + + k+l++  ++ +
  VIMSS1236715 254 YIFMCA-EHENINAIELYENEWKSfeDKYWSEKQRRGRINKPRMEWLVHATLQSERQREIDlSRLYNEYRDYVSKDLSSQRADLQVKRLKQYASQYK 349
                   677888.3333333333444444466777788888888888899999999999999999999999999999******99999999999999999988 PP

        DUF262 166 eilksa...........l 172
                   e ++ +            
  VIMSS1236715 350 ELVDGFgttpishfgyrI 367
                   865555666555555441 PP



Or compare VIMSS1236715 to CDD or PaperBLAST