PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS156538 to PF03235 (DUF262)

VIMSS156538 has 553 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-40  124.2   9.3    4.7e-40  124.2   9.3    2.9  2  VIMSS156538  


Domain annotation for each sequence (and alignments):
>> VIMSS156538  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   9.3   4.7e-40   4.7e-40      11     221 .]      17     239 ..       3     239 .. 0.79
   2 ?   -6.1   8.6         1         1      99     115 ..     387     403 ..     244     534 .. 0.64

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 4.7e-40
       DUF262  11 g..lriPdfQRpyvWeeeqieeLiedlla.....lrgyplGsivlwskaadsageleviDGQQRltTltlllaatkeesekriknleaeiekekeeed 101
                  +  ++iP++QR+y+Wee + e+L+ dl +      +++++G iv+   ++++++ +++iDGQQR++T +++laa    +e   + ++a  ++ +++++
  VIMSS156538  17 EniYKIPNYQREYSWEETELEDLWMDLSQiingeTESHFFGQIVI--HVDKKEKAKLIIDGQQRTSTAVIFLAA---MRELFTEMYNAGWDDAQFDAQ 109
                  1349***********************99*****9**********..677889*********************...233333333333333444444 PP

       DUF262 102 edrlkrreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksa................llsalkeklsli 183
                   + +k+  r++++ + +kli +e+++      +++++s + ++l  ++ ++++k+++ ay++++++l+++                ++s++ ek+s++
  VIMSS156538 110 DITTKFIGRYTQTRDERKLILGENDKSY---FSNRIQSVSSEQLGLQKATKSQKRINFAYNYFYKKLEEEinssdfledkygllktFFSTFTEKCSVM 204
                  4444445444444444444444444333...245666777777877888999*************99999**99999999999999999999****** PP

       DUF262 184 eielededdedqayeiFerlNsrGvpLtasellkalll 221
                  ++e++d ++   a++iFe+lN+rG+ L++++llk++l+
  VIMSS156538 205 FVETDDFNE---AFIIFETLNARGKDLETADLLKNHLF 239
                  ****99988...***********************997 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 1
       DUF262  99 eededrlkrreresdke 115
                  e++ +++ +++ ++  e
  VIMSS156538 387 ETEFSKIAFKIYQEEVE 403
                  22222222222222222 PP



Or compare VIMSS156538 to CDD or PaperBLAST