PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS18608 to PF03235 (DUF262)

VIMSS18608 has 95 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-15   43.2   1.2      3e-15   43.1   1.2    1.0  1  VIMSS18608  


Domain annotation for each sequence (and alignments):
>> VIMSS18608  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   1.2     3e-15     3e-15      50     132 ..       4      81 ..       1      92 [. 0.77

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 3e-15
      DUF262  50 skaadsageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrlkrreresdkellqkllrseklsleeke 132
                  k++d+++ +++iDGQQR+tT+++ll +     +k+ ++ ++e +k  + +++ +lk++   ++++++++ll+  + ++++++
  VIMSS18608   4 AKNEDNKKLYDIIDGQQRTTTIFMLLHV---LANKQNEKDKQETRK--YLYQKGELKLEVAPKNQSFFKTLLEAAEKENISQK 81 
                 478888**********************...555555555555554..5577778889999999********99998887743 PP



Or compare VIMSS18608 to CDD or PaperBLAST