VIMSS1878 has 584 amino acids
Query: DUF262 [M=221]
Accession: PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-37 115.2 0.1 6.7e-37 113.9 0.0 1.7 2 VIMSS1878
Domain annotation for each sequence (and alignments):
>> VIMSS1878
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.9 0.0 6.7e-37 6.7e-37 2 217 .. 14 226 .. 13 230 .. 0.74
2 ? -2.7 0.0 0.3 0.3 122 165 .. 297 340 .. 285 365 .. 0.57
Alignments for each domain:
== domain 1 score: 113.9 bits; conditional E-value: 6.7e-37
DUF262 2 edllskskrg.lriPdfQRpyvWeeeqveeLiedllalkgyplGsivlw............skaadsageleviDGQQRltTltlllaatkeesekrikn 88
+ ll+++++g + +Pd+QRp+vW++ +v++L++++ ++gyp+G++++w +++ ++l+v+DGQQRlt+l+ ++++ +k++ +
VIMSS1878 14 GGLLENIDSGeIGLPDIQRPFVWDTTRVRDLFDSM--YRGYPIGTLLFWengfpgehrtigTGPKKKVPRLLVVDGQQRLTALYSVMKG-VPIVDKNFRQ 110
5789999999999**********************..********************9997555566**********************.3333344443 PP
DUF262 89 leaeiek....ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksallsalktklslie 184
i ek+e + ++ er+ + ++l +e+++l + ++++ ++ +++ l++ee+ + ++++k+ ++ + + ++
VIMSS1878 111 RRLRIAFnpleEKFEVTN---TSIERDPTWISDISILWQEGFALYDFISSFMKRLEERRGLTEEERQRIPRSIQKLVNLVN--------------YPMTA 193
333333332212222222...334555677777778888888877766665555666666655554444444444444443..............68999 PP
DUF262 185 ieleseddedqayeiFerlNsrGvpLtasellk 217
+e++ +++e+q+ eiF r+NsrG+ L++++ +
VIMSS1878 194 LEISASATEEQVSEIFVRINSRGRTLNQADFIL 226
999999************************875 PP
== domain 2 score: -2.7 bits; conditional E-value: 0.3
DUF262 122 rseklsleekeelaelnsltkkdlakeekrneeknlikayevie 165
++ ++s+e ++e++++ ++ +k++ + +++ ++ik +i+
VIMSS1878 297 QTGEFSPERRDEQFDRLEKAQKEVLNLQNWHDFLKVIKRAGYIH 340
44455555555555555555555544444444444444444444 PP
Or compare VIMSS1878 to CDD or PaperBLAST