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Align VIMSS1878 to PF03235 (DUF262)

VIMSS1878 has 584 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence  Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-37  114.7   0.1    9.2e-37  113.4   0.0    1.7  2  VIMSS1878  


Domain annotation for each sequence (and alignments):
>> VIMSS1878  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   9.2e-37   9.2e-37       2     217 ..      14     226 ..      13     230 .. 0.74
   2 ?   -2.5   0.0      0.27      0.27     121     166 ..     296     341 ..     285     367 .. 0.59

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 9.2e-37
     DUF262   2 edllskskrg.lriPdfQRpyvWeeeqieeLiedllalrgyplGsivlw............skaadsageleviDGQQRltTltlllaatkeesekrikn 88 
                + ll+++++g + +Pd+QRp+vW++ ++++L++++  +rgyp+G++++w               +++ ++l+v+DGQQRlt+l+ ++++     +k++ +
  VIMSS1878  14 GGLLENIDSGeIGLPDIQRPFVWDTTRVRDLFDSM--YRGYPIGTLLFWengfpgehrtigTGPKKKVPRLLVVDGQQRLTALYSVMKG-VPIVDKNFRQ 110
                5789999999999**********************..********************9997555666**********************.3333333333 PP

     DUF262  89 leaeiek.ekeeededrlkrreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksallsalkeklslieiel 187
                    i   ++ee+ e   ++ er+  +    +++ +e+++l + ++++ ++  +++ l++ee r+  ++ i++++ + +             + ++ +e+
  VIMSS1878 111 RRLRIAFnPLEEKFEVTNTSIERDPTWISDISILWQEGFALYDFISSFMKRLEERRGLTEEE-RQRIPRSIQKLVNLVN-------------YPMTALEI 196
                33333333222222222233455566667777777777777775555555555556665544.4444444444444444.............68999999 PP

     DUF262 188 ededdedqayeiFerlNsrGvpLtasellk 217
                + +++e+q+ eiF r+NsrG+ L++++ + 
  VIMSS1878 197 SASATEEQVSEIFVRINSRGRTLNQADFIL 226
                999************************875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.27
     DUF262 121 irseklsleekeelselnsltkkdlakeekrneeknlikayevike 166
                +++ ++s+e ++e++++ ++ +k++ + +++    ++ik   +i++
  VIMSS1878 296 LQTGEFSPERRDEQFDRLEKAQKEVLNLQNWHDFLKVIKRAGYIHH 341
                4555555555555555555555555555555555555555555544 PP



Or compare VIMSS1878 to CDD or PaperBLAST