PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS260588 to PF03235 (DUF262)

VIMSS260588 has 608 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-31   95.3   4.6    3.2e-31   95.3   4.6    3.3  3  VIMSS260588  


Domain annotation for each sequence (and alignments):
>> VIMSS260588  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   4.6   3.2e-31   3.2e-31      12     218 ..      17     211 ..       6     213 .. 0.85
   2 !    3.2   8.3    0.0049    0.0049      81     220 ..     335     456 ..     276     457 .. 0.54
   3 ?   -2.1   1.2       0.2       0.2     151     151 ..     535     535 ..     459     604 .. 0.47

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 3.2e-31
       DUF262  12 lriPdfQRpyvWeeeqieeLiedllalrgyplGsivlwskaadsageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrlkrre 109
                  l++P fQR  vW+++q +e+++ l  + g+p+Gsi+l++   ++++++ +iDG QR +T++ ++++    ++ ++++++ +i  e+++  ++++k + 
  VIMSS260588  17 LKLPTFQRALVWSNNQKQEFFSTL--KDGFPFGSILLYE--YENDNKYSLIDGLQRYSTMVDFMEN--PTNYIEFEDFTLKIA-ELYKGASESTKAEV 107
                  799*********************..***********43..5569*********************..777777777777777.57788999999*** PP

       DUF262 110 resdkellqklirseklsleekeelselnsltkkdl....akeekrneeknlikayevikeilksallsalkeklslieielededdedqayeiFerl 203
                   +++++ l k+i+++ +s +e+++ +el ++  +++    + + +++  +   +++ +++++l+         ++++  i++e   +e + +e+F+rl
  VIMSS260588 108 VNYAEDILLKIIEKYIDSTKENVKVNELAKKMVDKFpvlgETDIRDEITQIQSDVITYFNNQLD-------ISNVKIPCIFFE--GEETELAEVFQRL 196
                  *************************999999999998886666666666666677777776433.......578899999999..67779******** PP

       DUF262 204 NsrGvpLtasellka 218
                  Ns+G++L++   + a
  VIMSS260588 197 NSGGKKLSKYQVFAA 211
                  ********9988876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0049
       DUF262  81 esekriknleaeiek..ekeeededrlkrreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksallsal 176
                  +++k i+n  +e++    +  ed+ ++k+ +r +  +++++l+ s++  +++++++++  ++tk+  ++++   ++  ++++                
  VIMSS260588 335 KIYKIINNKFKEAFSmvVSSREDKYETKSFTRLQIMSFFSSLWISSYSIELDENKNTFSIKQTKSLKKNQQVILSNIIIYAI---------------- 416
                  2233333333333333322223333333334445555555555555554444333333222222222222222222222222................ PP

       DUF262 177 keklslieielededdedqayeiFerlNsrGvpLtasellkall 220
                     +++i+ + +  + +++  +i+++ N+r ++  a e ++++l
  VIMSS260588 417 ---YDVIRKYWSG-TGDRKLMDIYISQNNRYLKPLAKEVFRNEL 456
                  ...3333333333.66699*********************9997 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.2
       DUF262 151 r 151
                  r
  VIMSS260588 535 R 535
                  2 PP



Or compare VIMSS260588 to CDD or PaperBLAST