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Align VIMSS27316 to PF03235 (DUF262)

VIMSS27316 has 706 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-41  129.5   4.7    1.1e-41  129.5   4.7    4.1  3  VIMSS27316  


Domain annotation for each sequence (and alignments):
>> VIMSS27316  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   4.7   1.1e-41   1.1e-41       5     220 ..      12     216 ..       8     217 .. 0.73
   2 ?    1.7   0.7     0.014     0.014     109     176 ..     222     291 ..     218     334 .. 0.66
   3 ?  -11.5  20.8         1         1      96     185 ..     558     628 ..     344     661 .. 0.64

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 1.1e-41
      DUF262   5 lskskrg.lriPdfQRpyvWeeeqveeLiedlla......lkgyplGsivlwskaadsageleviDGQQRltTltlllaa..t...keesekriknlea 91 
                 +++++++ ++iP++QR y+We+eq+e+L++d+ +       +g+++Gsi+ + +++  ++ l++iDGQQRltT+tll  a  +   +e + ++i++++ 
  VIMSS27316  12 FEENQNNqFVIPIYQRVYSWEKEQCEQLWDDIIKiggndkINGHFIGSILYVLDGNTPSSPLLIIDGQQRLTTITLLCIAlrShlsDEVKREEIESYLI 110
                 55555556*******************************99**********9888888**********************3312334444444444444 PP

      DUF262  92 eiekekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksa..llsalk...tklsliei 185
                 +++k       +++++  +esdk+ l +l++++k ++                      ++   +++++++++e++++++   l++++   +kl ++ i
  VIMSS27316 111 NSDK----DGDKKFRLILSESDKDTLLSLIDKNKRKP----------------------SEPSVKIMENFKLFEKWISKNtdKLETIFkglEKLMIVYI 183
                 4443....33445555555555666665555555554......................4555566666666666666656623333223377889999 PP

      DUF262 186 eleseddedqayeiFerlNsrGvpLtasellkall 220
                  l+  +++d+ + iFe++Ns+G +Lt+ +l+++++
  VIMSS27316 184 ALD--KEKDDPQLIFESMNSKGIELTQTDLIRNYI 216
                 999..66779***********************97 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.014
      DUF262 109 eresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksa......llsal 176
                 ++e++k++++ ++r  ++ ++++e+l+++   ++ ++    k+ + +n++k+y  ++++ +++      ll+ l
  VIMSS27316 222 TEEKQKDFYNGYWRAMEEDFKQNETLFNRFVRHYLTI----KTGKIPNIKKVYGAFKDYQQKEgieiedLLKDL 291
                 5667788888888888887777666666666555555....678888888888888886666677766633333 PP

  == domain 3  score: -11.5 bits;  conditional E-value: 1
      DUF262  96 ekeeededrlkrreresdkellqkllrseklslee.keelaelnsltkkdlakeekrneeknlikayevieeilksallsalktklsliei 185
                 +k+e++e++ k +++e++ ++ +k ++ ++ +++   +el+++  ++ k+l+++ ++n+++++                      +++ +i
  VIMSS27316 558 PKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPhSRELFDILRKEIKTLDERVTENFNSKY--------------------IAYKFFKI 628
                 111111111111111111111111111111111111122222222222222221111111111....................22222222 PP



Or compare VIMSS27316 to CDD or PaperBLAST